Researchers have solved a 60-year genetic mystery by pinpointing the change that makes cats orange: a ~5 kilobase deletion in a non-protein-coding region upstream of the gene Arhgap36. Skin cells that produce orange fur show about 13 times more Arhgap36 RNA than non-orange cells, and the deletion was found in every orange cat in a 188-cat dataset (145 orange, 6 calico/tortoiseshell, 37 non-orange). Two independent teams, led by Greg Barsh and Hidehiro Toh, showed that increased Arhgap36 expression in melanocytes suppresses genes for dark eumelanin and shifts pigment production toward reddish-yellow pheomelanin, explaining the fiery hues.
Because the mutation sits on the X chromosome, inheritance follows classic sex-linked patterns: males with the mutant X are uniformly orange, while females with one mutant and one normal X become mosaics due to random X inactivation, producing tortoiseshell or, with an additional white-spotting mutation that limits melanocyte survival, calico patterns. The change appears localized to pigment cells with no clear adverse health or cognitive effects reported. The work, published in Current Biology, reconciles long-observed coat-color patterns with a concrete genomic mechanism.
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